Oberseminar Computational Genomics
Module IN2122
Lecturer Julien Gagneur
Room tba
Time Wednesdays, 9:00 - 10:30
Timetable
| Wed, Oct 12 | Nils Wagner | Aberrant splicing prediction across human tissues |
| Wed, Oct 19 | Xueqi Cao | Detecting rare driver genes using multi-omics from 4200 leukemia patients |
| Wed, Oct 26 | Alexander Karollus | In-silico experiments are all you need |
| Wed, Nov 2 | Ines Scheller | Improved detection of functionally relevant aberrant splicing using the Intron Jaccard Index |
| Wed, Nov 9 | Daniela Klaproth-Andrade | A genetic algorithm with deep learning-based guided mutations improves de novo peptide sequencing |
| Wed, Nov 23 | Pedro Tomaz da Silva | Cellular energy metabolism regulates mRNA translation and degradation in a codon-specific manner |
| Wed, Nov 30 | Laura Martens | Modeling fragment counts improves single-cell ATAC-seq analysis |
| Wed, Dec 7 | Eva Holtkamp | DeepRVAT - Joint modeling of rare variant genetic effects using deep learning and data-driven burden scores |
| Wed, Dec 15 | Dennis Gankin | The self-monitored DNA language model uses evolution to uncover species-specific regulatory code |
| Wed, Dec 21 | Shubhankar Londhe | A genome wide experiment-based functional gene embedding |
| Wed, Jan 11 | Johannes Hingerl | Self-supervised Learning for Mass Spectrometry |
| Wed, Jan 18 | Vangelis Theodorakis | Functional annotation of lncRNAs using in-silico RNA-binding proteins' profiles |
| Wed, Jan 25 | Felix Brechtmann | A genome wide experimentally-based functional gene embedding |
| Wed, Feb 1 | Vicente Yépez | Boosting diagnostics of rare disease patients using integrating rare variants with expression and splicing outliers within Solve-RD |
| Wed, Feb 8 | Florian Hölzlwimmer | Multi-tissue prediction of aberrant gene expression |
| Wed, Feb 15 | Xueqi Cao | Expression outliers identified from 3803 leukemia transcriptomes reveal LRP1B as a novel biomarker for hairy cell leukemia-variant. |
| Wed, Mar 1 | Ines Scheller | Improved detection of functionally relevant aberrant splicing using the Intron Jaccard Index |
| Wed, Mar 8 | Nils Wagner | A Hidden Markov Model for fully unsupervised transcript annotation using binding sites of RNA-binding proteins |
| Wed, Mar 22 | Alexander Karollus | Studying the regulatory code through large-scale in-silico experiments |
| Wed, Mar 29 | Christian Mertes | Bavarian Cloud for Health Research (BCHR) and its genomic use cases - a collaborative infrastructure for health research community |