Oberseminar Computational Genomics
Module IN2122
Lecturer Julien Gagneur
Room 01.09.034
Time Wednesdays, 9:30 - 11:00
Timetable
| Wed, Oct. 24 | Behrooz Azarkhalili | DeepPathology: Deep Multi-task Learning for Inferring Molecular Pathology from Cancer Transcriptome |
| Wed, Oct. 31 | Ziga Avsec | Kipoi: Model zoo for genetics |
| Wed, Nov. 7 | Elaine Zosa | Weak splice sites as a source of private exons |
| Wed, Nov. 21 | Daniela Simancas | Kipoi-CADD and an introduction to CADD v1.4 |
| Wed, Dec. 19 | Ines Scheller | FraseR: Find RAre Splicing Events in RNA-seq data |
| Wed, Jan. 9 | Florian Hölzlwimmer | Mixture model-based analysis of large single cell RNA-seq datasets |
| Wed, Jan. 9 | Ping-Han Hsieh | talkk about his research work at the National Taiwan University |
| Wed, Jan. 16 | Madalina Giurgiu | REP - RNA Expression Prediction (Tissue-specific gene expression imputation) |
| Wed, Jan. 23 | Hasan Çelik | Improvement Efforts in MMSplice Exon Model: Retraining exon model with saturation mutagenesis data |
| Wed, Jan. 23 | Setareh Dolati | Single cell migration; The mechanism behind the movement of cancer cells |
| Wed, Jan. 30 | Daniela Simancas | Improving variant scoring with Kipoi-CADD |
| Wed, Jan. 30 | Enes Senel | Activity dependent proteomic changes during homeostatic scaling |
| Wed, Feb. 6 | Ziga Avsec | BPNet: Learning single-nucleotide resolution predictive models of in vivo transcription factor binding from ChIP-nexus data |
| Wed, Feb. 6 | David Fischer | Impulse model-based differential expression analysis of time course sequencing data |
| Wed, Feb. 13 | Madalina Giurgiu | Improved Pathogenic Variant Localization via a Hierarchical Model of Sub-regional Intolerance |
| Wed, Feb. 20 | Christian Mertes | FraseR: A statistical method to Find RAre Splicing Events in RNA-seq data with denoising autoencoders |
| Wed, Feb. 20 | Hasan Celik | Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species |
| Wed, Feb. 27 | Leonhard Wachutka | TTSeq and splicing kinetics |
| Wed, Feb. 27 | Ziga Avsec | A pitfall for machine learning methods aiming to predict across cell types |
| Wed, Mar. 6 | Dr Li Deng | From the environment to health: the functional role of phagome |
| Wed, Mar. 6 | Michaela Müller | A Genetic Diagnosis Workflow: Monoallelic Expression (MAE) & Variant Annotation |
| Wed. Mar. 19 | Christian Mertes | ranscript expression-aware annotation improves rare variant discovery and interpretation |
| Wed. Mar. 27 | Yingjiqiong Liang | Prediction of aberrant splicing from sequence and their role in rare and common disease |