Oberseminar Computational Genomics
Module IN2122
Lecturer Julien Gagneur
Room Seminar room 01.09.034
Time Wednesdays, 9:00 - 10:30
Timetable
| Wed, Oct 1 | Shubhankar Londhe | UKBGym: Benchmarking variant scoring methods using genotypes and phenotypes of half a million individuals. |
| Wed, Oct 8 | Johannes Hingerl | Harnessing evolution and large-scale perturbations to advance sequence-based models of gene regulation |
| Wed, Oct 22 | Nils Wagner | Context-specific splicing prediction: from a pragmatic shortcut towards cracking the code |
| Wed, Oct 29 | Maria Ryabtseva | Decoding Fungal Genomes with a Joint DNA & RNA Foundation Model |
| Wed, Nov 5 | Gihan Galindez | Deconvolution of RNA ensembles from structural probing data with DMS-VQ-VAE |
| Wed, Nov 12 | Anna Starovoit | Towards defining a phenotype for every human gene using rare-variant based gene impairment |
| Thur, Nov 20 | Tilman Hoffbauer | Understanding genomic structure with DNA language models |
| Wed, Nov 26 | Ata Jadid Ahari | Improved transcriptome and proteome outlier detection in solid tumors aids in interpreting variants of unknown significance |
| Wed, Dec 10 | Pedro Tomaz da Silva | Predicting the effect of insertion and deletion variants on fitness with gLMs |
| Wed, Dec 17 | Valentin Zaitsev | Tech Talk: Exploring avian morphological space using self-supervised embeddings |
| Wed, Jan 7 | Johann Promeuschel | Systematic unsupervised detection of genomic regulatory elements from gLM sequence representations |
| Wed, Jan 14 | Xavier Hernandez-Alias | Multi-scale analysis of mRNA translation adaptation to nutrient shifts reveals novel regulatory elements |
| Wed, Jan 21 | Yanik Bruns | De novo sequencing of multiple peptides in chimeric mass spectra |
| Wed, Feb 4 | George Tsitsiridis | Predicting variant effects on protein abundance |
| Thur, Feb 19 | Eva Holtkamp | DeepRVAT2: Scalable gene impairment scoring across rare variants in whole-genome sequencing data |
| Wed Feb 24 | Johannes Hingerl | Leveraging conservation to improve sequence-based models |
| Wed, Mar 11 | Andrew Behrens | Spotlight: Implementing variant reanalysis in the German Human Genome-Phenome Archive (GHGA) for improved diagnostic insight |
| Wed, Mar 18 | Maria Ryabtseva | Joint Modeling of DNA and RNA for Genomic Representation Learning |
| Wed, Mar 25 | Shubhankar Londhe | Assessing variant effect predictions using genotypes and phenotypes of half a million individuals |