Tobias Czempiel


Picture of Tobias Czempiel

M.Sc. Tobias Czempiel

Informatics 16 - Chair of Computer Aided Medical Procedures (Prof. Navab)

Postal address

Postal:
Boltzmannstr. 3
85748 Garching b. München

Research Interests

  • Deep Learning for Medical Applications & Imaging - Demo
  • Time Series Prediction (Recurrent Neural Networks, Temporal Neural Networks, Transformer, ...)
  • Surgical Data Science & Surgical Workflow Recognition

 

Curriculum Vitae

  • 03/2019 - current: PhD Student at CAMP Chair, TUM
  • 10/2016 - 03/2019: MSc Biomedical Computing, TUM
  • 10/2012 - 03/2016: BSc Medical Informatics, Reutlingen University

Complete CV available on linkedIn

Publications

  • Batić, Dominik; Holm, Felix; Özsoy, Ege; Czempiel, Tobias; Navab, Nassir: EndoViT: pretraining vision transformers on a large collection of endoscopic images. International Journal of Computer Assisted Radiology and Surgery, 2024 mehr…
  • Bastian, Lennart; Wang, Tony Danjun; Czempiel, Tobias; Busam, Benjamin; Navab, Nassir: DisguisOR: holistic face anonymization for the operating room. International Journal of Computer Assisted Radiology and Surgery 18 (7), 2023, 1209-1215 mehr…
  • Özsoy, Ege; Czempiel, Tobias; Örnek, Evin Pınar; Eck, Ulrich; Tombari, Federico; Navab, Nassir: Holistic OR domain modeling: a semantic scene graph approach. International Journal of Computer Assisted Radiology and Surgery, 2023 mehr…
  • Özsoy, Ege; Czempiel, Tobias; Holm, Felix; Pellegrini, Chantal; Navab, Nassir: LABRAD-OR: Lightweight Memory Scene Graphs for Accurate Bimodal Reasoning in Dynamic Operating Rooms. In: Lecture Notes in Computer Science. Springer Nature Switzerland, 2023 mehr…
  • Bastian, Lennart; Czempiel, Tobias; Heiliger, Christian; Karcz, Konrad; Eck, Ulrich; Busam, Benjamin; Navab, Nassir: Know your sensORs - A Modality Study For Surgical Action Classification. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization 11 (4), 2022, 1113-1121 mehr…
  • Özsoy, Ege; Örnek, Evin Pınar; Eck, Ulrich; Czempiel, Tobias; Tombari, Federico; Navab, Nassir: 4D-OR: Semantic Scene Graphs for OR Domain Modeling. MICCAI (8) (Lecture Notes in Computer Science), Springer, 2022 mehr…
  • Hedderich, Dennis M.; Keicher, Matthias; Wiestler, Benedikt; Gruber, Martin J.; Burwinkel, Hendrik; Hinterwimmer, Florian; Czempiel, Tobias; Spiro, Judith E.; Pinto dos Santos, Daniel; Heim, Dominik; Zimmer, Claus; Rückert, Daniel; Kirschke, Jan S.; Navab, Nassir: AI for Doctors—A Course to Educate Medical Professionals in Artificial Intelligence for Medical Imaging. Healthcare 9 (10), 2021, 1278 mehr…
  • Czempiel, T.; Paschali, M.; Kim, S.; Ostler, D.; Busam, B.; Navab, N.: OperA: Attention-Regularized Transformers for Surgical Phase Recognition. arXiv preprint arXiv:2103.03873, 2021 mehr…
  • Kim, S.; Goli, L.; Paschali, M.; Khakzar, A.; Keicher, M.; Czempiel, T.; Burian, E.; Braren, R.; Navab, N.; Wendler, T.: Longitudinal Quantitative Assessment of COVID-19 Infection Progression from Chest CTs. arXiv preprint arXiv:2103.07240, 2021 mehr…
  • Czempiel, Tobias; Paschali, Magdalini; Keicher, Matthias; Simson, Walter; Feussner, Hubertus; Kim, Seong Tae; Navab, Nassir: TeCNO: Surgical Phase Recognition with Multi-stage Temporal Convolutional Networks. In: Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. Springer International Publishing, 2020 mehr…
  • Czempiel, T.; Paschali, M.; Keicher, M.; Simson, W.; Feußner, H.; Kim, S.T.; Navab, N.: TeCNO: Surgical Phase Recognition with Multi-Stage Temporal Convolutional Networks. CoRR abs/2003.10751, 2020 mehr…

Google Scholar link

Teaching

Summer term 2024

TitleDatesTypeDurationLecturer (assistant)
Computer Science for Medical StudentsLinkVO2

Student Projects

Feel free to contact me if your interested in a IDP, Guided Research, Clicial Application Project or Thesis (MA, BA)

2022:

Type

IDP

CAP

IDP

MA

Status

Running

Running

Running

Running

Title

Reidentification in the OR

Desinging Demos for Deep Learning Applications

Hierachical Object and Human Scene Understanding

Clustering of Genetic Variants

Student

Ana-Maria Lacatusu

Hui Cheng

Nicolas Gossard

Anna Tröbs

2021:

Type

MA

BA

MA

IDP

Status

Finished

Finished

Finished

Finished

Title

Surgical Workflow Analysis under Limited Annotation

CholecTriplet2021: Surgical Action Triplet Recognition Challenge MICCAI 2021

Utilizing longitudinal data for COVID-19 segmentation

longitudinal depth map correction from noisy sensor data

Student

Fernando Benito Abad

Finn Gaida

Coco rogers

Ahmad Ebid