Theses and Project Opportunities

For current theses and projects, please check the project descriptions on the right. You are always welcome to apply with your own project idea as well, or if you think that your interests and skills match my research topics!

For your application, please always attach:

• Your motivation to do this exact project
• Your research interests
• Relevant projects and skills (ideally backed by some public resource like a GitHub repository or profile)
• If you want to do a Thesis / Guided Research / Interdisciplinary Project or similar
• Optional: Your CV and your current transcript of records

Research

Software:

• Biocentral - An open biomedical data analysis software for scientists and practitioners
  • Main GitHub: https://github.com/biocentral/biocentral
  • Backend GitHub: https://github.com/biocentral/biocentral_server
  • Web Application: https://app.biocentral.cloud/
• Biotrainer - Biological prediction models made simple.
  • GitHub: https://github.com/sacdallago/biotrainer 

Topics:

• Scientific Software Engineering
• Accessibility, Reproducibility, Open Source Software
• Data & Model Evaluation and Validation
• Bayesian Optimization for (biomedical) Laboratories
• Protein Language Model (pLM) Distillation & Reliability
• Protein-Protein Interaction