Oberseminar Computational Genomics

Module IN2122

Lecturer Julien Gagneur

Room Seminar room 01.09.034

Time Wednesdays, 9:00 - 10:30

Timetable

Wed, Apr 1	Pedro Tomaz da Silva	Predicting the effects of genetic variants from sequence-to-expression models and evolution
Wed, Apr 15	Anna Starovoit	Functional gene embeddings and multi-trait modelling improve gene-trait association discovery
Thur, Apr 30	Ata Jadid Ahari	Omics outlier analysis in rare cancers reveals the function of rare germline variants in predisposition genes
Wed, May 6	Gihan Galindez	Deconvolution of RNA conformational ensembles from chemical probing data
Wed, May 13	Tilman Hoffbauer	Gene annotation using genomic language models
Wed, May 20	Johann Promeuschel	Systematic unsupervised detection of in-vivo TF and RBP binding sites from gLM sequence representations
Wed, May 27	Yanik Bruns	De novo sequencing of multiple peptides in chimeric mass spectra
Wed, Jun 10	Miquel Anglada-Girotto	Debugging a machine learning model: AlphaGenome case study
Wed, Jun 17	Xavier Hernandez-Alias	Coordinated initiation and elongation control drives rapid metabolic reprogramming of mRNA translation
Wed, Jun 24	George Tsitsiridis	Leveraging large-scale omics to predict rare variant effects on expression and protein abundance
Tue, Jun 30	Drew Behrens	Spotlight: Implementing variant reanalysis in the German Human Genome-Phenome Archive (GHGA) for improved diagnostic insight
Wed, 8 Jul	Eva Holtkamp	DeepRVAT2: Unfied Modeling of Coding and Regulatory Rare Variation at Genome Scale for Enhanced Gene Discovery and Diagnostics
Wed, 15 Jul	Maria Ryabtseva	Joint Modeling of DNA and RNA Enhances Transcript Feature Prediction
Wed, 29 Jul	Pedro Tomaz da Silva	Filling the indel gap with genomic language models: modeling, interpreting, and benchmarking non-coding indel constraint